TY - JOUR
T1 - Biomembrane solubilization mechanism by Triton X-100
T2 - A computational study of the three stage model
AU - Pizzirusso, Antonio
AU - De Nicola, Antonio
AU - Sevink, G. J.Agur
AU - Correa, Andrea
AU - Cascella, Michele
AU - Kawakatsu, Toshihiro
AU - Rocco, Mattia
AU - Zhao, Ying
AU - Celino, Massimo
AU - Milano, Giuseppe
N1 - Funding Information:
G. M. thanks the HPC team of Enea (http://www.enea.it) for using the ENEA-GRID and the HPC facilities CRESCO (http:// www.cresco.enea.it) in Portici. The computing resources and the related technical support used for this work have been provided by CRESCO/ENEAGRID High Performance Computing infrastructure and its staff.98 CRESCO/ENEAGRID High Performance Computing infrastructure is funded by ENEA, the Italian National Agency for New Technologies, Energy and Sustainable Economic Development and by Italian and European research programmes, see http://www.cresco.enea.it/english for information. G. J. A. S. acknowledges funding by the VW foundation in the context of the project ‘Multiscale hybrid modeling of (bio)-membranes’. M. C. acknowledges the support by the Research Council of Norway (RCN) through the CoE Centre for Theoretical and Computational Chemistry (CTCC) Grant No. 179568/V30 and 171185/V30.
Publisher Copyright:
© 2017 the Owner Societies.
PY - 2017
Y1 - 2017
N2 - The solubilization mechanism of lipid membranes in the presence of Triton X-100 (TX-100) is investigated at molecular resolution using molecular dynamics (MD) simulations. Thanks to the large time and length scales accessible by the hybrid particle-field formulation of the models employed here, the complex process of membrane solubilization has been studied, with the goal of verifying the three stage model reported in the literature. DPPC lipid bilayers and vesicles have been studied at different concentrations of the TX-100 detergent employing coarse grained (CG) models. Systems up to ∼600.000 beads, corresponding to more than 2 millions heavy atoms, have been simulated. Moreover, in order to clarify several experimental pieces of evidence, both slow and fast detergent partition scenarios have been investigated. Flat and curved (vesicles) lipid bilayer surfaces, interacting with TX-100, have been considered to study the curvature effects on the detergent partition rate in the membrane. Shape and conformational changes of mixed DPPC/TX-100 vesicles, as a function of TX-100 content, have also been studied. In particular, high curvature surfaces, corresponding to a higher local TX-100 content, promote a membrane rupture. In flat lipid surfaces, on the time scale simulated the detergent partition is almost absent, following a different pathway of the solubilization membrane mechanism.
AB - The solubilization mechanism of lipid membranes in the presence of Triton X-100 (TX-100) is investigated at molecular resolution using molecular dynamics (MD) simulations. Thanks to the large time and length scales accessible by the hybrid particle-field formulation of the models employed here, the complex process of membrane solubilization has been studied, with the goal of verifying the three stage model reported in the literature. DPPC lipid bilayers and vesicles have been studied at different concentrations of the TX-100 detergent employing coarse grained (CG) models. Systems up to ∼600.000 beads, corresponding to more than 2 millions heavy atoms, have been simulated. Moreover, in order to clarify several experimental pieces of evidence, both slow and fast detergent partition scenarios have been investigated. Flat and curved (vesicles) lipid bilayer surfaces, interacting with TX-100, have been considered to study the curvature effects on the detergent partition rate in the membrane. Shape and conformational changes of mixed DPPC/TX-100 vesicles, as a function of TX-100 content, have also been studied. In particular, high curvature surfaces, corresponding to a higher local TX-100 content, promote a membrane rupture. In flat lipid surfaces, on the time scale simulated the detergent partition is almost absent, following a different pathway of the solubilization membrane mechanism.
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U2 - 10.1039/c7cp03871b
DO - 10.1039/c7cp03871b
M3 - Article
C2 - 28956043
AN - SCOPUS:85034604396
SN - 1463-9076
VL - 19
SP - 29780
EP - 29794
JO - Physical Chemistry Chemical Physics
JF - Physical Chemistry Chemical Physics
IS - 44
ER -