TY - JOUR
T1 - Construction of a genetic AND gate under a new standard for assembly of genetic parts
AU - Ayukawa, Shotaro
AU - Kobayashi, Akio
AU - Nakashima, Yusaku
AU - Takagi, Hidemasa
AU - Hamada, Shogo
AU - Uchiyama, Masahiko
AU - Yugi, Katsuyuki
AU - Murata, Satoshi
AU - Sakakibara, Yasubumi
AU - Hagiya, Masami
AU - Yamamura, Masayuki
AU - Kiga, Daisuke
N1 - Funding Information:
This research has been partially supported by the PRESTO program of JST for DK and KAKENHI programs from JSPS and MEXT (219649 for SA, 14085203 for MY and DK, and 21650018 for MH and DK). This article has been published as part of BMC Genomics Volume 11 Supplement 4, 2010: Ninth International Conference on Bioinformatics (InCoB2010): Computational Biology. The full contents of the supplement are available online at http://www.biomedcentral.com/1471-2164/11?issue=S4.
PY - 2010/12/2
Y1 - 2010/12/2
N2 - Background: Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to achieve appropriate regulation of the systems. However, a time-consuming process is required for the insertion of an operator, a binding site of a protein for gene expression, to the gene regulatory region of a plasmid. Thus, a standardized method for integrating operator sequences to the regulatory region of a plasmid is required.Results: We developed a standardized method for integrating operator sequences to the regulatory region of a plasmid and constructed a synthetic promoter that functions as a genetic AND gate. By standardizing the regulatory region of a plasmid and the operator parts, we established a platform for modular assembly of the operator parts. Moreover, by assembling two different operator parts on the regulatory region, we constructed a regulatory device with an AND gate function.Conclusions: We implemented a new standard to assemble operator parts for construction of functional genetic logic gates. The logic gates at the molecular scale have important implications for reprogramming cellular behavior.
AB - Background: Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to achieve appropriate regulation of the systems. However, a time-consuming process is required for the insertion of an operator, a binding site of a protein for gene expression, to the gene regulatory region of a plasmid. Thus, a standardized method for integrating operator sequences to the regulatory region of a plasmid is required.Results: We developed a standardized method for integrating operator sequences to the regulatory region of a plasmid and constructed a synthetic promoter that functions as a genetic AND gate. By standardizing the regulatory region of a plasmid and the operator parts, we established a platform for modular assembly of the operator parts. Moreover, by assembling two different operator parts on the regulatory region, we constructed a regulatory device with an AND gate function.Conclusions: We implemented a new standard to assemble operator parts for construction of functional genetic logic gates. The logic gates at the molecular scale have important implications for reprogramming cellular behavior.
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U2 - 10.1186/1471-2164-11-S4-S16
DO - 10.1186/1471-2164-11-S4-S16
M3 - Article
C2 - 21143799
AN - SCOPUS:78649774637
SN - 1471-2164
VL - 11
JO - BMC Genomics
JF - BMC Genomics
IS - SUPPL. 4
M1 - S16
ER -