Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

Mostafa Abdelrahman; Mai Mitoma; Takao Ikeuchi; Mitsutaka Mori; Kyoko Murakami; Yukio Ozaki; Masaru Matsumoto; Atsuko Uragami; Akira Kanno

doi:10.1016/j.dib.2018.11.034

Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

Mostafa Abdelrahman, Mai Mitoma, Takao Ikeuchi, Mitsutaka Mori, Kyoko Murakami, Yukio Ozaki, Masaru Matsumoto, Atsuko Uragami, Akira Kanno

LIF - Molecular and Chemical Life Science

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Abstract

This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.

Original language	English
Pages (from-to)	2117-2121
Number of pages	5
Journal	Data in Brief
Volume	21
DOIs	https://doi.org/10.1016/j.dib.2018.11.034
Publication status	Published - 2018 Dec

Keywords

Asparagus
Insertion/deletion
RNA-Seq
Single nucleotide polymorphism
Transcriptome

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10.1016/j.dib.2018.11.034

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Abdelrahman, M., Mitoma, M., Ikeuchi, T., Mori, M., Murakami, K., Ozaki, Y., Matsumoto, M., Uragami, A., & Kanno, A. (2018). Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection. Data in Brief, 21, 2117-2121. https://doi.org/10.1016/j.dib.2018.11.034

@article{caad4530bf824e149d798e086ce863bb,

title = "Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection",

abstract = "This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.",

keywords = "Asparagus, Insertion/deletion, RNA-Seq, Single nucleotide polymorphism, Transcriptome",

author = "Mostafa Abdelrahman and Mai Mitoma and Takao Ikeuchi and Mitsutaka Mori and Kyoko Murakami and Yukio Ozaki and Masaru Matsumoto and Atsuko Uragami and Akira Kanno",

note = "Funding Information: This work was supported by a Grant-in-Aid for Science and Technology Research Promotion Program (27002B) for Agriculture, Forestry, Fisheries and Food Industry from the Ministry of Agriculture, Forestry and Fisheries (Japan). Publisher Copyright: {\textcopyright} 2018 The Authors",

year = "2018",

month = dec,

doi = "10.1016/j.dib.2018.11.034",

language = "English",

volume = "21",

pages = "2117--2121",

journal = "Data in Brief",

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Abdelrahman, M, Mitoma, M, Ikeuchi, T, Mori, M, Murakami, K, Ozaki, Y, Matsumoto, M, Uragami, A & Kanno, A 2018, 'Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection', Data in Brief, vol. 21, pp. 2117-2121. https://doi.org/10.1016/j.dib.2018.11.034

TY - JOUR

T1 - Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

AU - Abdelrahman, Mostafa

AU - Mitoma, Mai

AU - Ikeuchi, Takao

AU - Mori, Mitsutaka

AU - Murakami, Kyoko

AU - Ozaki, Yukio

AU - Matsumoto, Masaru

AU - Uragami, Atsuko

AU - Kanno, Akira

N1 - Funding Information: This work was supported by a Grant-in-Aid for Science and Technology Research Promotion Program (27002B) for Agriculture, Forestry, Fisheries and Food Industry from the Ministry of Agriculture, Forestry and Fisheries (Japan). Publisher Copyright: © 2018 The Authors

PY - 2018/12

Y1 - 2018/12

N2 - This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.

AB - This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.

KW - Asparagus

KW - Insertion/deletion

KW - RNA-Seq

KW - Single nucleotide polymorphism

KW - Transcriptome

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SN - 2352-3409

VL - 21

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JO - Data in Brief

JF - Data in Brief

ER -

Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

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Keywords

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