TY - JOUR
T1 - Fluid-like chromatin
T2 - Toward understanding the real chromatin organization present in the cell
AU - Maeshima, Kazuhiro
AU - Tamura, Sachiko
AU - Hansen, Jeffrey C.
AU - Itoh, Yuji
N1 - Funding Information:
We are grateful to Dr. S. Ide, Dr. K. Hibino, Dr. M. Sasai, Mr. K. Minami, Ms. S. Iida for critical reading of this manuscript and Dr. U.K. Laemmli, Dr. M.T. Kanemaki, Dr. T. Tani, Dr. H. Sasaki, Dr. Y. Murayama and Maeshima lab members for helpful discussion. We must apologize that we could not mention many important works and articles on chromatin structure and dynamics and related methodologies owing to space limitations. This work was supported by JSPS grant (19K23735,16H04746, 16H06279 (PAGS) and 19H05273), Takeda Science Foundation, JST CREST grant (JPMJCR15G2), and National Science Foundation grant (1814012) to J.H. Y.I. was supported by NIG Postdoctoral Fellowship and JSPS Postdoctoral Fellowship (PD).
Funding Information:
We are grateful to Dr. S. Ide, Dr. K. Hibino, Dr. M. Sasai, Mr. K. Minami, Ms. S. Iida for critical reading of this manuscript and Dr. U.K. Laemmli, Dr. M.T. Kanemaki, Dr. T. Tani, Dr. H. Sasaki, Dr. Y. Murayama and Maeshima lab members for helpful discussion. We must apologize that we could not mention many important works and articles on chromatin structure and dynamics and related methodologies owing to space limitations. This work was supported by JSPS grant ( 19K23735 , 16H04746 , 16H06279 (PAGS) and 19H05273 ), Takeda Science Foundation , JST CREST grant ( JPMJCR15G2 ), and National Science Foundation grant ( 1814012 ) to J.H. Y.I. was supported by NIG Postdoctoral Fellowship and JSPS Postdoctoral Fellowship (PD).
Publisher Copyright:
© 2020 The Authors
PY - 2020/6
Y1 - 2020/6
N2 - Eukaryotic chromatin is a negatively charged polymer consisting of genomic DNA, histones, and various nonhistone proteins. Because of its highly charged character, the structure of chromatin varies greatly depending on the surrounding environment (i.e. cations etc.): from an extended 10-nm fiber, to a folded 30-nm fiber, to chromatin condensates/liquid-droplets. Over the last ten years, newly developed technologies have drastically shifted our view on chromatin from a static regular structure to a more irregular and dynamic one, locally like a fluid. Since no single imaging (or genomics) method can tell us everything and beautiful images (or models) can fool our minds, comprehensive analyses based on many technical approaches are important to capture actual chromatin organization inside the cell. Here we critically discuss our current view on chromatin and methodology used to support the view.
AB - Eukaryotic chromatin is a negatively charged polymer consisting of genomic DNA, histones, and various nonhistone proteins. Because of its highly charged character, the structure of chromatin varies greatly depending on the surrounding environment (i.e. cations etc.): from an extended 10-nm fiber, to a folded 30-nm fiber, to chromatin condensates/liquid-droplets. Over the last ten years, newly developed technologies have drastically shifted our view on chromatin from a static regular structure to a more irregular and dynamic one, locally like a fluid. Since no single imaging (or genomics) method can tell us everything and beautiful images (or models) can fool our minds, comprehensive analyses based on many technical approaches are important to capture actual chromatin organization inside the cell. Here we critically discuss our current view on chromatin and methodology used to support the view.
KW - 30-nm fiber
KW - Chromatin
KW - Hi-C
KW - Liquid droplet
KW - Nucleosome
KW - Super-resolution imaging
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U2 - 10.1016/j.ceb.2020.02.016
DO - 10.1016/j.ceb.2020.02.016
M3 - Review article
C2 - 32283330
AN - SCOPUS:85083100451
SN - 0955-0674
VL - 64
SP - 77
EP - 89
JO - Current Opinion in Cell Biology
JF - Current Opinion in Cell Biology
ER -