TY - JOUR
T1 - Giant enhancement of fluctuation in small biological systems under external fields
AU - Hayashi, Kumiko
AU - Hasegawa, Shin
AU - Tsunoda, Satoshi P.
N1 - Funding Information:
This work was supported by Grants-in-Aid for Scientific Research to KH from the MEXT (No. 26104501). We thank Prof H Kandori for encouraging the authors (KH and ST) to carry out the study on ChR2.
Publisher Copyright:
© 2016 IOP Publishing Ltd and SISSA Medialab srl.
PY - 2016
Y1 - 2016
N2 - The giant enhancement (GE) of fluctuation under an external field is a universal phenomenon predicted by the theoretical analysis given in (Reimann et al 2001 Phys. Rev. Lett.). Here, we propose the application of the theory of the GE of fluctuation to estimate the energy barrier of a biomolecule that exhibits its function subject to thermal noise. The rotary motor protein F1 was used as a model, which is a component of FoF1 adenosine triphosphate (ATP)-synthase. In the single-molecule experiment on F1, the diffusion coeffcients of a rotary probe attached to F1, which characterised the fluctuation of the system, were measured under the influence of an electrorotary field. These diffusion coeffcients were then used to estimate a highenergy barrier of the rotary potential of F1 based on the theory of the GE of fluctuation. Furthermore, the ion channel protein channelrhodopsin (ChR) was used as another research model. The current fluctuations of ions moving through ChR were numerically investigated using a simulation model of the protein in the presence of an external voltage. The energy barrier for ion conduction is discussed based on the current fluctuations.
AB - The giant enhancement (GE) of fluctuation under an external field is a universal phenomenon predicted by the theoretical analysis given in (Reimann et al 2001 Phys. Rev. Lett.). Here, we propose the application of the theory of the GE of fluctuation to estimate the energy barrier of a biomolecule that exhibits its function subject to thermal noise. The rotary motor protein F1 was used as a model, which is a component of FoF1 adenosine triphosphate (ATP)-synthase. In the single-molecule experiment on F1, the diffusion coeffcients of a rotary probe attached to F1, which characterised the fluctuation of the system, were measured under the influence of an electrorotary field. These diffusion coeffcients were then used to estimate a highenergy barrier of the rotary potential of F1 based on the theory of the GE of fluctuation. Furthermore, the ion channel protein channelrhodopsin (ChR) was used as another research model. The current fluctuations of ions moving through ChR were numerically investigated using a simulation model of the protein in the presence of an external voltage. The energy barrier for ion conduction is discussed based on the current fluctuations.
KW - Fluctuations (experiments)
KW - Fluctuations (theory)
KW - Single molecule
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U2 - 10.1088/1742-5468/2016/05/054028
DO - 10.1088/1742-5468/2016/05/054028
M3 - Article
AN - SCOPUS:85013960981
SN - 1742-5468
VL - 2016
JO - Journal of Statistical Mechanics: Theory and Experiment
JF - Journal of Statistical Mechanics: Theory and Experiment
IS - 5
M1 - 054028
ER -