TY - JOUR
T1 - Intermolecular interaction in nucleobases and dimethyl sulfoxide/water molecules
T2 - A DFT, NBO, AIM and NCI analysis
AU - Venkataramanan, Natarajan Sathiyamoorthy
AU - Suvitha, Ambigapathy
AU - Kawazoe, Yoshiyuki
N1 - Funding Information:
The NSV thank the SERB-DST, India for funding through a project (EMR-II-SB/S1/PC-047/2013). The author gratefully acknowledges the Center for Computational Materials Science at the Institute for Materials Research for use of the Hitachi SR16000 (Model M1) supercomputer system.
PY - 2017/11
Y1 - 2017/11
N2 - This study aims to cast light on the physico-chemical nature and energetics of interactions between the nucleobases and water/DMSO molecules which occurs through the non-conventional CH⋯O/N − H bonds using a comprehensive quantum-chemical approach. The computed interaction energies do not show any appreciable change for all the nucleobase-solvent complexes, conforming the experimental findings on the hydration enthalpies. Compared to water, DMSO form complexes with high interaction energies. The quantitative molecular electrostatic potentials display a charge transfer during the complexation. NBO analysis shows the nucleobase-DMSO complexes, have higher stabilization energy values than the nucleobase-water complexes. AIM analysis illustrates that the in the nucleobase-DMSO complexes, S[dbnd]O⋯H-N type interaction have strongest hydrogen bond strength with high EHB values. Furthermore, the Laplacian of electron density and total electron density were negative indicating the partial covalent nature of bonding in these systems, while the other bonds are classified as noncovalent interactions. EDA analysis indicates, the electrostatic interaction is more pronounced in the case of nucleobase-water complexes, while the dispersion contribution is more dominant in nucleobase-DMSO complexes. NCI-RDG analysis proves the existence of strong hydrogen bonding in nucleobase-DMSO complex, which supports the AIM results.
AB - This study aims to cast light on the physico-chemical nature and energetics of interactions between the nucleobases and water/DMSO molecules which occurs through the non-conventional CH⋯O/N − H bonds using a comprehensive quantum-chemical approach. The computed interaction energies do not show any appreciable change for all the nucleobase-solvent complexes, conforming the experimental findings on the hydration enthalpies. Compared to water, DMSO form complexes with high interaction energies. The quantitative molecular electrostatic potentials display a charge transfer during the complexation. NBO analysis shows the nucleobase-DMSO complexes, have higher stabilization energy values than the nucleobase-water complexes. AIM analysis illustrates that the in the nucleobase-DMSO complexes, S[dbnd]O⋯H-N type interaction have strongest hydrogen bond strength with high EHB values. Furthermore, the Laplacian of electron density and total electron density were negative indicating the partial covalent nature of bonding in these systems, while the other bonds are classified as noncovalent interactions. EDA analysis indicates, the electrostatic interaction is more pronounced in the case of nucleobase-water complexes, while the dispersion contribution is more dominant in nucleobase-DMSO complexes. NCI-RDG analysis proves the existence of strong hydrogen bonding in nucleobase-DMSO complex, which supports the AIM results.
KW - AIM
KW - DFT
KW - Non-covalent interactions
KW - Nucleobases
KW - Solvents
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U2 - 10.1016/j.jmgm.2017.09.022
DO - 10.1016/j.jmgm.2017.09.022
M3 - Article
AN - SCOPUS:85030704935
SN - 1093-3263
VL - 78
SP - 48
EP - 60
JO - Journal of Molecular Graphics and Modelling
JF - Journal of Molecular Graphics and Modelling
ER -