TY - JOUR
T1 - Isoprenoid-chained lipid EROCOC17+4
T2 - a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography
AU - Ihara, Kentaro
AU - Hato, Masakatsu
AU - Nakane, Takanori
AU - Yamashita, Keitaro
AU - Kimura-Someya, Tomomi
AU - Hosaka, Toshiaki
AU - Ishizuka-Katsura, Yoshiko
AU - Tanaka, Rie
AU - Tanaka, Tomoyuki
AU - Sugahara, Michihiro
AU - Hirata, Kunio
AU - Yamamoto, Masaki
AU - Nureki, Osamu
AU - Tono, Kensuke
AU - Nango, Eriko
AU - Iwata, So
AU - Shirouzu, Mikako
N1 - Funding Information:
We are grateful to Mariko Ikeda, Sayako Kohno, Takehiro Shinoda, Kaori Ito, Yoshiaki Kawano, Noboru Ohsawa, and Mio Inoue for their help with protein sample preparation, X-ray data collection, and expression plasmid construction. We thank Tetsuya Hori, Hiroaki Tanabe, Shinji Mori, Yoshihiro Nakamura, and Shigeyuki Yokoyama for useful discussions. We appreciate Dr. Hiroyuki Minamikawa, AIST Tsukuba, Japan, for his valuable discussion about the IPCLs. We also thank the beamline staffs of SPring-8 and SACLA for their assistance with LCP-SFX data collection. SS-ROX was performed using the Platform for Drug Discovery, Informatics, and Structural Life Science (PDIS) beam time granted to M.Sh. The XFEL experiments were conducted at BL3 of SACLA with the approval of the Japan Synchrotron Radiation Research Institute (JASRI) (Proposal Number 2017A8019). Computational analysis was performed on the SACLA HPC system and Mini-K super-computing system. This work was supported by JSPS KAKENHI Grant Number JP16K14688 to K.I. and M.H. S.I. acknowledges the Platform Project for Supporting Drug Discovery and Life Science Research (Basis for Supporting Innovative Drug Discovery and Life Science Research (BINDS)) from Japan Agency for Medical Research and Development (AMED).
Publisher Copyright:
© 2020, The Author(s).
PY - 2020/12
Y1 - 2020/12
N2 - In meso crystallization of membrane proteins relies on the use of lipids capable of forming a lipidic cubic phase (LCP). However, almost all previous crystallization trials have used monoacylglycerols, with 1-(cis-9-octadecanoyl)-rac-glycerol (MO) being the most widely used lipid. We now report that EROCOC17+4 mixed with 10% (w/w) cholesterol (Fig. 1) serves as a new matrix for crystallization and a crystal delivery medium in the serial femtosecond crystallography of Adenosine A2A receptor (A2AR). The structures of EROCOC17+4-matrix grown A2AR crystals were determined at 2.0 Å resolution by serial synchrotron rotation crystallography at a cryogenic temperature, and at 1.8 Å by LCP-serial femtosecond crystallography, using an X-ray free-electron laser at 4 and 20 °C sample temperatures, and are comparable to the structure of the MO-matrix grown A2AR crystal (PDB ID: 4EIY). Moreover, X-ray scattering measurements indicated that the EROCOC17+4/water system did not form the crystalline LC phase at least down to − 20 °C, in marked contrast to the equilibrium MO/water system, which transforms into the crystalline LC phase below about 17 °C. As the LC phase formation within the LCP-matrix causes difficulties in protein crystallography experiments in meso, this feature of EROCOC17+4 will expand the utility of the in meso method.
AB - In meso crystallization of membrane proteins relies on the use of lipids capable of forming a lipidic cubic phase (LCP). However, almost all previous crystallization trials have used monoacylglycerols, with 1-(cis-9-octadecanoyl)-rac-glycerol (MO) being the most widely used lipid. We now report that EROCOC17+4 mixed with 10% (w/w) cholesterol (Fig. 1) serves as a new matrix for crystallization and a crystal delivery medium in the serial femtosecond crystallography of Adenosine A2A receptor (A2AR). The structures of EROCOC17+4-matrix grown A2AR crystals were determined at 2.0 Å resolution by serial synchrotron rotation crystallography at a cryogenic temperature, and at 1.8 Å by LCP-serial femtosecond crystallography, using an X-ray free-electron laser at 4 and 20 °C sample temperatures, and are comparable to the structure of the MO-matrix grown A2AR crystal (PDB ID: 4EIY). Moreover, X-ray scattering measurements indicated that the EROCOC17+4/water system did not form the crystalline LC phase at least down to − 20 °C, in marked contrast to the equilibrium MO/water system, which transforms into the crystalline LC phase below about 17 °C. As the LC phase formation within the LCP-matrix causes difficulties in protein crystallography experiments in meso, this feature of EROCOC17+4 will expand the utility of the in meso method.
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U2 - 10.1038/s41598-020-76277-x
DO - 10.1038/s41598-020-76277-x
M3 - Article
C2 - 33168855
AN - SCOPUS:85095682394
SN - 2045-2322
VL - 10
JO - Scientific Reports
JF - Scientific Reports
IS - 1
M1 - 19305
ER -