TY - JOUR
T1 - JMorp
T2 - Japanese Multi Omics Reference Panel
AU - Tadaka, Shu
AU - Saigusa, Daisuke
AU - Motoike, Ikuko N.
AU - Inoue, Jin
AU - Aoki, Yuichi
AU - Shirota, Matsuyuki
AU - Koshiba, Seizo
AU - Yamamoto, Masayuki
AU - Kinoshita, Kengo
N1 - Funding Information:
Platform Program for Promotion of Genome Medicine [16815713] from the Japan Agency for Medical Research and Development (AMED); Tohoku Medical Megabank Project of Ministry from Education, Culture, Sports, Science and Technology (MEXT); Center of Innovation Program from Japan Science and Technology Agency (JST). Funding for open access charge: Platform Program for Promotion of Genome Medicine [16815713] from the Japan Agency for Medical Research and Development (AMED). Conflict of interest statement. None declared.
Publisher Copyright:
© 2017 The Author(s).
PY - 2018/1/1
Y1 - 2018/1/1
N2 - We developed jMorp, a new database containing metabolome and proteome data for plasma obtained from >5000 healthy Japanese volunteers from the Tohoku Medical Megabank Cohort Study, which is available at https://jmorp.megabank.tohoku. ac.jp. Metabolome data were measured by proton nuclear magnetic resonance (NMR) and liquid chromatography-mass spectrometry (LC-MS), while proteome data were obtained by nanoLC-MS. We released the concentration distributions of 37 metabolites identified by NMR, distributions of peak intensities of 257 characterized metabolites by LC-MS, and observed frequencies of 256 abundant proteins. Additionally, correlation networks for the metabolites can be observed using an interactive network viewer. Compared with some existing databases, jMorp has some unique features: (i) Metabolome data were obtained using a single protocol in a single institute, ensuring that measurement biases were significantly minimized; (ii) The database contains large-scale data for healthy volunteers with various health records and genome data and (iii) Correlations between metabolites can be easily observed using the graphical viewer. Metabolites data are becoming important intermediate markers for evaluating the health states of humans, and thus jMorp is an outstanding resource for a wide range of researchers, particularly those in the fields of medical science, applied molecular biology, and biochemistry.
AB - We developed jMorp, a new database containing metabolome and proteome data for plasma obtained from >5000 healthy Japanese volunteers from the Tohoku Medical Megabank Cohort Study, which is available at https://jmorp.megabank.tohoku. ac.jp. Metabolome data were measured by proton nuclear magnetic resonance (NMR) and liquid chromatography-mass spectrometry (LC-MS), while proteome data were obtained by nanoLC-MS. We released the concentration distributions of 37 metabolites identified by NMR, distributions of peak intensities of 257 characterized metabolites by LC-MS, and observed frequencies of 256 abundant proteins. Additionally, correlation networks for the metabolites can be observed using an interactive network viewer. Compared with some existing databases, jMorp has some unique features: (i) Metabolome data were obtained using a single protocol in a single institute, ensuring that measurement biases were significantly minimized; (ii) The database contains large-scale data for healthy volunteers with various health records and genome data and (iii) Correlations between metabolites can be easily observed using the graphical viewer. Metabolites data are becoming important intermediate markers for evaluating the health states of humans, and thus jMorp is an outstanding resource for a wide range of researchers, particularly those in the fields of medical science, applied molecular biology, and biochemistry.
UR - http://www.scopus.com/inward/record.url?scp=85040952113&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85040952113&partnerID=8YFLogxK
U2 - 10.1093/nar/gkx978
DO - 10.1093/nar/gkx978
M3 - Article
C2 - 29069501
AN - SCOPUS:85040952113
SN - 0305-1048
VL - 46
SP - D551-D557
JO - Nucleic Acids Research
JF - Nucleic Acids Research
IS - D1
ER -