TY - JOUR
T1 - jMorp updates in 2020
T2 - Large enhancement of multi-omics data resources on the general Japanese population
AU - Tadaka, Shu
AU - Hishinuma, Eiji
AU - Komaki, Shohei
AU - Motoike, Ikuko N.
AU - Kawashima, Junko
AU - Saigusa, Daisuke
AU - Inoue, Jin
AU - Takayama, Jun
AU - Okamura, Yasunobu
AU - Aoki, Yuichi
AU - Shirota, Matsuyuki
AU - Otsuki, Akihito
AU - Katsuoka, Fumiki
AU - Shimizu, Atsushi
AU - Tamiya, Gen
AU - Koshiba, Seizo
AU - Sasaki, Makoto
AU - Yamamoto, Masayuki
AU - Kinoshita, Kengo
N1 - Funding Information:
We are indebted to all volunteers who participated in this TMM project. We would like to acknowledge all members associated with this project; the member list is available at the following website: https://www.megabank.tohoku.ac.jp/ english/a200601/. Tohoku Medical Megabank Project from the Ministry of Education, Culture, Sports, Science and Technology (MEXT); Reconstruction Agency (in part); Japan Agency for Medical Research and Development (AMED) [JP20km0105001, JP20km0105002 for Tohoku University, JP20km0105003, JP20km0105004 for Iwate Medical University]; Advanced Genome Research and Bioinformatics Study to Facilitate Medical Innovation from AMED [JP20km0405203] (in part); Platform Project for Supporting Drug Discovery and Life Science Research (Basis for Supporting Innovative Drug Discovery and Life Science Research (BINDS)) from AMED [JP19am0101067 to K.K] (in part); all computational resources were provided by the ToMMo supercomputer system, which is supported by the Facilitation of R&D Platform for AMED Genome Medicine Support conducted by AMED [JP20km0405001]; Project for Promoting Public Utilization of Advanced Research Infrastructure (MEXT), Sharing and administrative network for research equipment (MEXT) (in part). Funding for open access charge: Japan Agency for Medical Research and Development.
Publisher Copyright:
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
PY - 2021/1/8
Y1 - 2021/1/8
N2 - In the Tohoku Medical Megabank project, genome and omics analyses of participants in two cohort studies were performed. A part of the data is available at the Japanese Multi Omics Reference Panel (jMorp; https://jmorp.megabank.tohoku.ac.jp) as a web-based database, as reported in our previous manuscript published in Nucleic Acid Research in 2018. At that time, jMorp mainly consisted of metabolome data; however, now genome, methylome, and transcriptome data have been integrated in addition to the enhancement of the number of samples for the metabolome data. For genomic data, jMorp provides a Japanese reference sequence obtained using de novo assembly of sequences from three Japanese individuals and allele frequencies obtained using whole-genome sequencing of 8,380 Japanese individuals. In addition, the omics data include methylome and transcriptome data from ∼300 samples and distribution of concentrations of more than 755 metabolites obtained using high-throughput nuclear magnetic resonance and high-sensitivity mass spectrometry. In summary, jMorp now provides four different kinds of omics data (genome, methylome, transcriptome, and metabolome), with a user-friendly web interface. This will be a useful scientific data resource on the general population for the discovery of disease biomarkers and personalized disease prevention and early diagnosis.
AB - In the Tohoku Medical Megabank project, genome and omics analyses of participants in two cohort studies were performed. A part of the data is available at the Japanese Multi Omics Reference Panel (jMorp; https://jmorp.megabank.tohoku.ac.jp) as a web-based database, as reported in our previous manuscript published in Nucleic Acid Research in 2018. At that time, jMorp mainly consisted of metabolome data; however, now genome, methylome, and transcriptome data have been integrated in addition to the enhancement of the number of samples for the metabolome data. For genomic data, jMorp provides a Japanese reference sequence obtained using de novo assembly of sequences from three Japanese individuals and allele frequencies obtained using whole-genome sequencing of 8,380 Japanese individuals. In addition, the omics data include methylome and transcriptome data from ∼300 samples and distribution of concentrations of more than 755 metabolites obtained using high-throughput nuclear magnetic resonance and high-sensitivity mass spectrometry. In summary, jMorp now provides four different kinds of omics data (genome, methylome, transcriptome, and metabolome), with a user-friendly web interface. This will be a useful scientific data resource on the general population for the discovery of disease biomarkers and personalized disease prevention and early diagnosis.
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U2 - 10.1093/nar/gkaa1034
DO - 10.1093/nar/gkaa1034
M3 - Article
C2 - 33179747
AN - SCOPUS:85099428677
SN - 0305-1048
VL - 49
SP - D536-D544
JO - Nucleic Acids Research
JF - Nucleic Acids Research
IS - D1
ER -