P-cats: Prediction of catalytic residues in proteins from their tertiary structures

Kengo Kinoshita; Motonori Ota

doi:10.1093/bioinformatics/bti561

P-cats: Prediction of catalytic residues in proteins from their tertiary structures

Kengo Kinoshita, Motonori Ota

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Abstract

Summary: P-cats is a web server that predicts the catalytic residues in proteins from the atomic coordinates. P-cats receives a coordinate file of the tertiary structure and sends out analytical results via e-mail. The reply contains a summary and two URLs to allow the user to examine the conserved residues: one for interactive images of the prediction results and the other for a graphical view of the multiple sequence alignment.

Original language	English
Pages (from-to)	3570-3571
Number of pages	2
Journal	Bioinformatics
Volume	21
Issue number	17
DOIs	https://doi.org/10.1093/bioinformatics/bti561
Publication status	Published - 2005 Sept 1
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/bti561

Cite this

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title = "P-cats: Prediction of catalytic residues in proteins from their tertiary structures",

abstract = "Summary: P-cats is a web server that predicts the catalytic residues in proteins from the atomic coordinates. P-cats receives a coordinate file of the tertiary structure and sends out analytical results via e-mail. The reply contains a summary and two URLs to allow the user to examine the conserved residues: one for interactive images of the prediction results and the other for a graphical view of the multiple sequence alignment.",

author = "Kengo Kinoshita and Motonori Ota",

note = "Funding Information: The authors would like to thank Ken Nishikawa for discussions on the prediction scheme, Keiko Ichikawa for preparing the delightful feline drawings on the web pages, Haruki Nakamura for providing his program for electrostatic calculations and Keiichi Homma for a critical reading of the manuscript. This work was supported by grants-in-aid from the Ministry of Education, Culture, Sports, Science and Technology of Japan to K.K. and M.O.",

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T2 - Prediction of catalytic residues in proteins from their tertiary structures

AU - Kinoshita, Kengo

AU - Ota, Motonori

N1 - Funding Information: The authors would like to thank Ken Nishikawa for discussions on the prediction scheme, Keiko Ichikawa for preparing the delightful feline drawings on the web pages, Haruki Nakamura for providing his program for electrostatic calculations and Keiichi Homma for a critical reading of the manuscript. This work was supported by grants-in-aid from the Ministry of Education, Culture, Sports, Science and Technology of Japan to K.K. and M.O.

PY - 2005/9/1

Y1 - 2005/9/1

N2 - Summary: P-cats is a web server that predicts the catalytic residues in proteins from the atomic coordinates. P-cats receives a coordinate file of the tertiary structure and sends out analytical results via e-mail. The reply contains a summary and two URLs to allow the user to examine the conserved residues: one for interactive images of the prediction results and the other for a graphical view of the multiple sequence alignment.

AB - Summary: P-cats is a web server that predicts the catalytic residues in proteins from the atomic coordinates. P-cats receives a coordinate file of the tertiary structure and sends out analytical results via e-mail. The reply contains a summary and two URLs to allow the user to examine the conserved residues: one for interactive images of the prediction results and the other for a graphical view of the multiple sequence alignment.

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ER -

P-cats: Prediction of catalytic residues in proteins from their tertiary structures

Abstract

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