TY - JOUR
T1 - Reduction and retrospection approach to modeling of hierarchical biological rhythms
AU - Nakao, Mitsuyuki
AU - Okayama, Hiroshi
AU - Katayama, Norihiro
AU - Karashima, Akihiro
PY - 2007
Y1 - 2007
N2 - Physiome inherently investigates hierarchical layers of biological system. In the post genome era, the number of layers should increase because possible mechanisms at molecular level are always referred to. However, biological modeling in the post genome era has to face unavoidable uncertainties in biological measurements and explosion of degree of freedom. An exhaustive modeling seems to be necessary to understand possible mechanisms underlying biological phenomena at every hierarchical level. However, simultaneously it looks like an impossible or reckless trial. In order to get rid of them, we propose a novel modeling strategy that integrates the top-down retrospection and bottom-up reduction modeling. Here, our strategy is applied to modeling of biological rhythms which is an appropriate system to study because of the penetration of rhythmic dynamics through all of the hierarchical layers.
AB - Physiome inherently investigates hierarchical layers of biological system. In the post genome era, the number of layers should increase because possible mechanisms at molecular level are always referred to. However, biological modeling in the post genome era has to face unavoidable uncertainties in biological measurements and explosion of degree of freedom. An exhaustive modeling seems to be necessary to understand possible mechanisms underlying biological phenomena at every hierarchical level. However, simultaneously it looks like an impossible or reckless trial. In order to get rid of them, we propose a novel modeling strategy that integrates the top-down retrospection and bottom-up reduction modeling. Here, our strategy is applied to modeling of biological rhythms which is an appropriate system to study because of the penetration of rhythmic dynamics through all of the hierarchical layers.
KW - Molecular clock mechanism
KW - NonSCN oscillator
KW - Physiome
KW - SCN oscillator
KW - Suprachiasmatic nucleus (SCN)
UR - http://www.scopus.com/inward/record.url?scp=72149098419&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=72149098419&partnerID=8YFLogxK
U2 - 10.1541/ieejeiss.127.1486
DO - 10.1541/ieejeiss.127.1486
M3 - Review article
AN - SCOPUS:72149098419
SN - 0385-4221
VL - 127
SP - 1486
EP - 1490
JO - IEEJ Transactions on Electronics, Information and Systems
JF - IEEJ Transactions on Electronics, Information and Systems
IS - 10
ER -