TY - JOUR
T1 - Self-replication of DNA rings
AU - Kim, Junghoon
AU - Lee, Junwye
AU - Hamada, Shogo
AU - Murata, Satoshi
AU - Ha Park, Sung
N1 - Funding Information:
The authors thank J. Kim and A. Tandon for discussions and technical assistance with DNA extraction. S.H.P. was supported by the National Research Foundation of Korea (grants 2012R1A2A2A01005985, 2014R1A2A1A11053213 and 2012M3A7B4049801), funded by the Korean government (Ministry of Science, ICT and Future Planning and Ministry of Education). S.M. and S.H. were supported by Grant-in-aid for Scientific Research grants (nos. 22220001/24104005 and 23800006/24104005, respectively) from the Japanese government (Ministry of Education, Culture, Sports, Science and Technology).
Publisher Copyright:
© 2015 Macmillan Publishers Limited.
PY - 2015/6/6
Y1 - 2015/6/6
N2 - Biology provides numerous examples of self-replicating machines, but artificially engineering such complex systems remains a formidable challenge. In particular, although simple artificial self-replicating systems including wooden blocks, magnetic systems, modular robots and synthetic molecular systems have been devised, such kinematic self-replicators are rare compared with examples of theoretical cellular self-replication. One of the principal reasons for this is the amount of complexity that arises when you try to incorporate self-replication into a physical medium. In this regard, DNA is a prime candidate material for constructing self-replicating systems due to its ability to self-assemble through molecular recognition. Here, we show that DNA T-motifs, which self-assemble into ring structures, can be designed to self-replicate through toehold-mediated strand displacement reactions. The inherent design of these rings allows the population dynamics of the systems to be controlled. We also analyse the replication scheme within a universal framework of self-replication and derive a quantitative metric of the self-replicability of the rings.
AB - Biology provides numerous examples of self-replicating machines, but artificially engineering such complex systems remains a formidable challenge. In particular, although simple artificial self-replicating systems including wooden blocks, magnetic systems, modular robots and synthetic molecular systems have been devised, such kinematic self-replicators are rare compared with examples of theoretical cellular self-replication. One of the principal reasons for this is the amount of complexity that arises when you try to incorporate self-replication into a physical medium. In this regard, DNA is a prime candidate material for constructing self-replicating systems due to its ability to self-assemble through molecular recognition. Here, we show that DNA T-motifs, which self-assemble into ring structures, can be designed to self-replicate through toehold-mediated strand displacement reactions. The inherent design of these rings allows the population dynamics of the systems to be controlled. We also analyse the replication scheme within a universal framework of self-replication and derive a quantitative metric of the self-replicability of the rings.
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U2 - 10.1038/nnano.2015.87
DO - 10.1038/nnano.2015.87
M3 - Article
C2 - 25961509
AN - SCOPUS:84930484347
SN - 1748-3387
VL - 10
SP - 528
EP - 533
JO - Nature Nanotechnology
JF - Nature Nanotechnology
IS - 6
ER -