Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana

S. Tabata; T. Kaneko; Y. Nakamura; H. Kotani; T. Kato; E. Asamizu; N. Miyajima; S. Sasamoto; T. Kimura; T. Hosouchi; K. Kawashima; M. Kohara; M. Matsumoto; A. Matsuno; A. Muraki; S. Nakayama; N. Nakazaki; K. Naruo; S. Okumura; S. Shinpo; C. Takeuchi; T. Wada; A. Watanabe; M. Yamada; M. Yasuda; S. Sato; M. de la Bastide; E. Huang; L. Spiegel; L. Gnoj; A. O'Shaughnessy; R. Preston; K. Habermann; J. Murray; D. Johnson; T. Rohlfing; J. Nelson; T. Stoneking; K. Pepin; J. Spieth; M. Sekhon; J. Armstrong; M. Becker; E. Belter; H. Cordum; M. Cordes; L. Courtney; W. Courtney; M. Dante; H. Du; J. Edwards; J. Fryman; B. Haakensen; E. Lamar; P. Latreille; S. Leonard; R. Meyer; E. Mulvaney; P. Ozersky; A. Riley; C. Strowmatt; C. Wagner-McPherson; A. Wollam; M. Yoakum; M. Bell; N. Dedhia; L. Parnell; R. Shah; M. Rodriguez; L. H. See; D. Vil; J. Baker; K. Kirchoff; K. Toth; L. King; A. Bahret; B. Miller; M. Marra; R. Martienssen; W. R. McCombie; R. K. Wilson; G. Murphy; I. Bancroft; G. Volckaert; R. Wambutt; A. Düsterhöft; W. Stiekema; T. Pohl; K. D. Entian; N. Terryn; N. Hartley; E. Bent; S. Johnson; S. A. Langham; B. McCullagh; J. Robben; B. Grymonprez; W. Zimmermann; U. Ramsperger; H. Wedler; K. Balke; E. Wedler; S. Peters; M. van Staveren; W. Dirkse; P. Mooijman; R. K. Lankhorst; T. Weitzenegger; G. Bothe; M. Rose; J. Hauf; S. Berneiser; S. Hempel; M. Feldpausch; S. Lamberth; R. Villarroel; J. Gielen; W. Ardiles; O. Bents; K. Lemcke; G. Kolesov; K. Mayer; S. Rudd; H. Schoof; C. Schueller; P. Zaccaria; H. W. Mewes; M. Bevan; P. Fransz

doi:10.1038/35048507

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana

S. Tabata, T. Kaneko, Y. Nakamura, H. Kotani, T. Kato, E. Asamizu, N. Miyajima, S. Sasamoto, T. Kimura, T. Hosouchi, K. Kawashima, M. Kohara, M. Matsumoto, A. Matsuno, A. Muraki, S. Nakayama, N. Nakazaki, K. Naruo, S. Okumura, S. ShinpoC. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda, S. Sato, M. de la Bastide, E. Huang, L. Spiegel, L. Gnoj, A. O'Shaughnessy, R. Preston, K. Habermann, J. Murray, D. Johnson, T. Rohlfing, J. Nelson, T. Stoneking, K. Pepin, J. Spieth, M. Sekhon, J. Armstrong, M. Becker, E. Belter, H. Cordum, M. Cordes, L. Courtney, W. Courtney, M. Dante, H. Du, J. Edwards, J. Fryman, B. Haakensen, E. Lamar, P. Latreille, S. Leonard, R. Meyer, E. Mulvaney, P. Ozersky, A. Riley, C. Strowmatt, C. Wagner-McPherson, A. Wollam, M. Yoakum, M. Bell, N. Dedhia, L. Parnell, R. Shah, M. Rodriguez, L. H. See, D. Vil, J. Baker, K. Kirchoff, K. Toth, L. King, A. Bahret, B. Miller, M. Marra, R. Martienssen, W. R. McCombie, R. K. Wilson, G. Murphy, I. Bancroft, G. Volckaert, R. Wambutt, A. Düsterhöft, W. Stiekema, T. Pohl, K. D. Entian, N. Terryn, N. Hartley, E. Bent, S. Johnson, S. A. Langham, B. McCullagh, J. Robben, B. Grymonprez, W. Zimmermann, U. Ramsperger, H. Wedler, K. Balke, E. Wedler, S. Peters, M. van Staveren, W. Dirkse, P. Mooijman, R. K. Lankhorst, T. Weitzenegger, G. Bothe, M. Rose, J. Hauf, S. Berneiser, S. Hempel, M. Feldpausch, S. Lamberth, R. Villarroel, J. Gielen, W. Ardiles, O. Bents, K. Lemcke, G. Kolesov, K. Mayer, S. Rudd, H. Schoof, C. Schueller, P. Zaccaria, H. W. Mewes, M. Bevan, P. Fransz

LIF - Ecological Developmental Adaptability Life Sciences

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Abstract

The genome of the model plant Arabidopsis thaliana has been sequenced by an international collaboration. The Arabidopsis Genome Initiative. Here we report the complete sequence of chromosome 5. This chromosome is 26 megabases long; it is the second largest Arabidopsis chromosome and represents 21% of the sequenced regions of the genome. The sequence of chromosomes 2 and 4 have been reported previously and that of chromosomes 1 and 3, together with an analysis of the complete genome sequence, are reported in this issue. Analysis of the sequence of chromosome 5 yields further insights into centromere structure and the sequence determinants of heterochromatin condensation. The 5,874 genes encoded on chromosome 5 reveal several new functions in plants, and the patterns of gene organization provide insights into the mechanisms and extent of genome evolution in plants.

Original language	English
Pages (from-to)	823-826
Number of pages	4
Journal	Nature
Volume	408
Issue number	6814
DOIs	https://doi.org/10.1038/35048507
Publication status	Published - 2000 Dec 14

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Tabata, S., Kaneko, T., Nakamura, Y., Kotani, H., Kato, T., Asamizu, E., Miyajima, N., Sasamoto, S., Kimura, T., Hosouchi, T., Kawashima, K., Kohara, M., Matsumoto, M., Matsuno, A., Muraki, A., Nakayama, S., Nakazaki, N., Naruo, K., Okumura, S., ... Fransz, P. (2000). Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature, 408(6814), 823-826. https://doi.org/10.1038/35048507

@article{5ac9f55f57a948ce9f1726df325af64f,

title = "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana",

abstract = "The genome of the model plant Arabidopsis thaliana has been sequenced by an international collaboration. The Arabidopsis Genome Initiative. Here we report the complete sequence of chromosome 5. This chromosome is 26 megabases long; it is the second largest Arabidopsis chromosome and represents 21% of the sequenced regions of the genome. The sequence of chromosomes 2 and 4 have been reported previously and that of chromosomes 1 and 3, together with an analysis of the complete genome sequence, are reported in this issue. Analysis of the sequence of chromosome 5 yields further insights into centromere structure and the sequence determinants of heterochromatin condensation. The 5,874 genes encoded on chromosome 5 reveal several new functions in plants, and the patterns of gene organization provide insights into the mechanisms and extent of genome evolution in plants.",

author = "S. Tabata and T. Kaneko and Y. Nakamura and H. Kotani and T. Kato and E. Asamizu and N. Miyajima and S. Sasamoto and T. Kimura and T. Hosouchi and K. Kawashima and M. Kohara and M. Matsumoto and A. Matsuno and A. Muraki and S. Nakayama and N. Nakazaki and K. Naruo and S. Okumura and S. Shinpo and C. Takeuchi and T. Wada and A. Watanabe and M. Yamada and M. Yasuda and S. Sato and {de la Bastide}, M. and E. Huang and L. Spiegel and L. Gnoj and A. O'Shaughnessy and R. Preston and K. Habermann and J. Murray and D. Johnson and T. Rohlfing and J. Nelson and T. Stoneking and K. Pepin and J. Spieth and M. Sekhon and J. Armstrong and M. Becker and E. Belter and H. Cordum and M. Cordes and L. Courtney and W. Courtney and M. Dante and H. Du and J. Edwards and J. Fryman and B. Haakensen and E. Lamar and P. Latreille and S. Leonard and R. Meyer and E. Mulvaney and P. Ozersky and A. Riley and C. Strowmatt and C. Wagner-McPherson and A. Wollam and M. Yoakum and M. Bell and N. Dedhia and L. Parnell and R. Shah and M. Rodriguez and See, {L. H.} and D. Vil and J. Baker and K. Kirchoff and K. Toth and L. King and A. Bahret and B. Miller and M. Marra and R. Martienssen and McCombie, {W. R.} and Wilson, {R. K.} and G. Murphy and I. Bancroft and G. Volckaert and R. Wambutt and A. D{\"u}sterh{\"o}ft and W. Stiekema and T. Pohl and Entian, {K. D.} and N. Terryn and N. Hartley and E. Bent and S. Johnson and Langham, {S. A.} and B. McCullagh and J. Robben and B. Grymonprez and W. Zimmermann and U. Ramsperger and H. Wedler and K. Balke and E. Wedler and S. Peters and {van Staveren}, M. and W. Dirkse and P. Mooijman and Lankhorst, {R. K.} and T. Weitzenegger and G. Bothe and M. Rose and J. Hauf and S. Berneiser and S. Hempel and M. Feldpausch and S. Lamberth and R. Villarroel and J. Gielen and W. Ardiles and O. Bents and K. Lemcke and G. Kolesov and K. Mayer and S. Rudd and H. Schoof and C. Schueller and P. Zaccaria and Mewes, {H. W.} and M. Bevan and P. Fransz",

year = "2000",

month = dec,

day = "14",

doi = "10.1038/35048507",

language = "English",

volume = "408",

pages = "823--826",

journal = "Nature",

issn = "0028-0836",

publisher = "Nature Publishing Group",

number = "6814",

}

Tabata, S, Kaneko, T, Nakamura, Y, Kotani, H, Kato, T, Asamizu, E, Miyajima, N, Sasamoto, S, Kimura, T, Hosouchi, T, Kawashima, K, Kohara, M, Matsumoto, M, Matsuno, A, Muraki, A, Nakayama, S, Nakazaki, N, Naruo, K, Okumura, S, Shinpo, S, Takeuchi, C, Wada, T, Watanabe, A, Yamada, M, Yasuda, M, Sato, S, de la Bastide, M, Huang, E, Spiegel, L, Gnoj, L, O'Shaughnessy, A, Preston, R, Habermann, K, Murray, J, Johnson, D, Rohlfing, T, Nelson, J, Stoneking, T, Pepin, K, Spieth, J, Sekhon, M, Armstrong, J, Becker, M, Belter, E, Cordum, H, Cordes, M, Courtney, L, Courtney, W, Dante, M, Du, H, Edwards, J, Fryman, J, Haakensen, B, Lamar, E, Latreille, P, Leonard, S, Meyer, R, Mulvaney, E, Ozersky, P, Riley, A, Strowmatt, C, Wagner-McPherson, C, Wollam, A, Yoakum, M, Bell, M, Dedhia, N, Parnell, L, Shah, R, Rodriguez, M, See, LH, Vil, D, Baker, J, Kirchoff, K, Toth, K, King, L, Bahret, A, Miller, B, Marra, M, Martienssen, R, McCombie, WR, Wilson, RK, Murphy, G, Bancroft, I, Volckaert, G, Wambutt, R, Düsterhöft, A, Stiekema, W, Pohl, T, Entian, KD, Terryn, N, Hartley, N, Bent, E, Johnson, S, Langham, SA, McCullagh, B, Robben, J, Grymonprez, B, Zimmermann, W, Ramsperger, U, Wedler, H, Balke, K, Wedler, E, Peters, S, van Staveren, M, Dirkse, W, Mooijman, P, Lankhorst, RK, Weitzenegger, T, Bothe, G, Rose, M, Hauf, J, Berneiser, S, Hempel, S, Feldpausch, M, Lamberth, S, Villarroel, R, Gielen, J, Ardiles, W, Bents, O, Lemcke, K, Kolesov, G, Mayer, K, Rudd, S, Schoof, H, Schueller, C, Zaccaria, P, Mewes, HW, Bevan, M & Fransz, P 2000, 'Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana', Nature, vol. 408, no. 6814, pp. 823-826. https://doi.org/10.1038/35048507

TY - JOUR

T1 - Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana

AU - Tabata, S.

AU - Kaneko, T.

AU - Nakamura, Y.

AU - Kotani, H.

AU - Kato, T.

AU - Asamizu, E.

AU - Miyajima, N.

AU - Sasamoto, S.

AU - Kimura, T.

AU - Hosouchi, T.

AU - Kawashima, K.

AU - Kohara, M.

AU - Matsumoto, M.

AU - Matsuno, A.

AU - Muraki, A.

AU - Nakayama, S.

AU - Nakazaki, N.

AU - Naruo, K.

AU - Okumura, S.

AU - Shinpo, S.

AU - Takeuchi, C.

AU - Wada, T.

AU - Watanabe, A.

AU - Yamada, M.

AU - Yasuda, M.

AU - Sato, S.

AU - de la Bastide, M.

AU - Huang, E.

AU - Spiegel, L.

AU - Gnoj, L.

AU - O'Shaughnessy, A.

AU - Preston, R.

AU - Habermann, K.

AU - Murray, J.

AU - Johnson, D.

AU - Rohlfing, T.

AU - Nelson, J.

AU - Stoneking, T.

AU - Pepin, K.

AU - Spieth, J.

AU - Sekhon, M.

AU - Armstrong, J.

AU - Becker, M.

AU - Belter, E.

AU - Cordum, H.

AU - Cordes, M.

AU - Courtney, L.

AU - Courtney, W.

AU - Dante, M.

AU - Du, H.

AU - Edwards, J.

AU - Fryman, J.

AU - Haakensen, B.

AU - Lamar, E.

AU - Latreille, P.

AU - Leonard, S.

AU - Meyer, R.

AU - Mulvaney, E.

AU - Ozersky, P.

AU - Riley, A.

AU - Strowmatt, C.

AU - Wagner-McPherson, C.

AU - Wollam, A.

AU - Yoakum, M.

AU - Bell, M.

AU - Dedhia, N.

AU - Parnell, L.

AU - Shah, R.

AU - Rodriguez, M.

AU - See, L. H.

AU - Vil, D.

AU - Baker, J.

AU - Kirchoff, K.

AU - Toth, K.

AU - King, L.

AU - Bahret, A.

AU - Miller, B.

AU - Marra, M.

AU - Martienssen, R.

AU - McCombie, W. R.

AU - Wilson, R. K.

AU - Murphy, G.

AU - Bancroft, I.

AU - Volckaert, G.

AU - Wambutt, R.

AU - Düsterhöft, A.

AU - Stiekema, W.

AU - Pohl, T.

AU - Entian, K. D.

AU - Terryn, N.

AU - Hartley, N.

AU - Bent, E.

AU - Johnson, S.

AU - Langham, S. A.

AU - McCullagh, B.

AU - Robben, J.

AU - Grymonprez, B.

AU - Zimmermann, W.

AU - Ramsperger, U.

AU - Wedler, H.

AU - Balke, K.

AU - Wedler, E.

AU - Peters, S.

AU - van Staveren, M.

AU - Dirkse, W.

AU - Mooijman, P.

AU - Lankhorst, R. K.

AU - Weitzenegger, T.

AU - Bothe, G.

AU - Rose, M.

AU - Hauf, J.

AU - Berneiser, S.

AU - Hempel, S.

AU - Feldpausch, M.

AU - Lamberth, S.

AU - Villarroel, R.

AU - Gielen, J.

AU - Ardiles, W.

AU - Bents, O.

AU - Lemcke, K.

AU - Kolesov, G.

AU - Mayer, K.

AU - Rudd, S.

AU - Schoof, H.

AU - Schueller, C.

AU - Zaccaria, P.

AU - Mewes, H. W.

AU - Bevan, M.

AU - Fransz, P.

PY - 2000/12/14

Y1 - 2000/12/14

N2 - The genome of the model plant Arabidopsis thaliana has been sequenced by an international collaboration. The Arabidopsis Genome Initiative. Here we report the complete sequence of chromosome 5. This chromosome is 26 megabases long; it is the second largest Arabidopsis chromosome and represents 21% of the sequenced regions of the genome. The sequence of chromosomes 2 and 4 have been reported previously and that of chromosomes 1 and 3, together with an analysis of the complete genome sequence, are reported in this issue. Analysis of the sequence of chromosome 5 yields further insights into centromere structure and the sequence determinants of heterochromatin condensation. The 5,874 genes encoded on chromosome 5 reveal several new functions in plants, and the patterns of gene organization provide insights into the mechanisms and extent of genome evolution in plants.

AB - The genome of the model plant Arabidopsis thaliana has been sequenced by an international collaboration. The Arabidopsis Genome Initiative. Here we report the complete sequence of chromosome 5. This chromosome is 26 megabases long; it is the second largest Arabidopsis chromosome and represents 21% of the sequenced regions of the genome. The sequence of chromosomes 2 and 4 have been reported previously and that of chromosomes 1 and 3, together with an analysis of the complete genome sequence, are reported in this issue. Analysis of the sequence of chromosome 5 yields further insights into centromere structure and the sequence determinants of heterochromatin condensation. The 5,874 genes encoded on chromosome 5 reveal several new functions in plants, and the patterns of gene organization provide insights into the mechanisms and extent of genome evolution in plants.

UR - http://www.scopus.com/inward/record.url?scp=0034649580&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0034649580&partnerID=8YFLogxK

U2 - 10.1038/35048507

DO - 10.1038/35048507

M3 - Article

C2 - 11130714

AN - SCOPUS:0034649580

SN - 0028-0836

VL - 408

SP - 823

EP - 826

JO - Nature

JF - Nature

IS - 6814

ER -

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana

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