TY - JOUR
T1 - Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells
AU - Iida, Shiori
AU - Shinkai, Soya
AU - Itoh, Yuji
AU - Tamura, Sachiko
AU - Kanemaki, Masato T.
AU - Onami, Shuichi
AU - Maeshima, Kazuhiro
N1 - Funding Information:
We are grateful to S. Ide and K. Hibino for helpful discussion and support, E. Prieto for initial preliminary results, K. M. Marshall for the critical reading and editing of this manuscript, and J. K. Eykelenboom and T. Tanaka for providing HT-1080 cells with tetO/ TetR-mCherry (a clone of TT75, TT165). We thank A. Kimura for help in using Imaris software; T. Natsume for suggestions regarding cell cycle synchronization; H. Imamura for his suggestions on ATP reduction; Y. Shimamoto, T. Torisawa, H. Niki, and Y. Murayama for useful suggestions; and Maeshima laboratory members for helpful discussions and advice. We also thank the members of Nikon Solutions and Nikon, especially H. Mimura, T. Fujiwara, K. Hamada, A. Tsurumai, and I. Sase, for contributing to the improvement of our oblique illumination microscopy Y.I. was supported as a National Institute of Genetics Postdoctoral Fellow and is currently a Japan Society for the Promotion of Science (JSPS) Fellow. S.I. is a SOKENDAI Special Researcher supported by JST SPRING (JPMJSP2104). This work was supported by JSPS and MEXT KAKENHI grants (20H05550 and 21H05763 to S.S.; 19K23735 and 20J00572 to Y.I.; 18H05412 to S.O.; 19H05273 and 20H05936 to K.M.), JST CREST (JPMJCR15G2 to K.M.), the Takeda Science Foundation (to K.M.), and the Uehara Memorial Foundation (to K.M.).
Publisher Copyright:
Copyright © 2022 The Authors,
PY - 2022/6
Y1 - 2022/6
N2 - Dynamic chromatin behavior plays a critical role in various genome functions. However, it remains unclear how chromatin behavior changes during interphase, where the nucleus enlarges and genomic DNA doubles. While the previously reported chromatin movements varied during interphase when measured using a minute or longer time scale, we unveil that local chromatin motion captured by single-nucleosome imaging/tracking on a second time scale remained steady throughout G1, S, and G2 phases in live human cells. This motion mode appeared to change beyond this time scale. A defined genomic region also behaved similarly. Combined with Brownian dynamics modeling, our results suggest that this steady-state chromatin motion was mainly driven by thermal fluctuations. Steady-state motion temporarily increased following a DNA damage response. Our findings support the viscoelastic properties of chromatin. We propose that the observed steady-state chromatin motion allows cells to conduct housekeeping functions, such as transcription and DNA replication, under similar environments during interphase.
AB - Dynamic chromatin behavior plays a critical role in various genome functions. However, it remains unclear how chromatin behavior changes during interphase, where the nucleus enlarges and genomic DNA doubles. While the previously reported chromatin movements varied during interphase when measured using a minute or longer time scale, we unveil that local chromatin motion captured by single-nucleosome imaging/tracking on a second time scale remained steady throughout G1, S, and G2 phases in live human cells. This motion mode appeared to change beyond this time scale. A defined genomic region also behaved similarly. Combined with Brownian dynamics modeling, our results suggest that this steady-state chromatin motion was mainly driven by thermal fluctuations. Steady-state motion temporarily increased following a DNA damage response. Our findings support the viscoelastic properties of chromatin. We propose that the observed steady-state chromatin motion allows cells to conduct housekeeping functions, such as transcription and DNA replication, under similar environments during interphase.
UR - http://www.scopus.com/inward/record.url?scp=85131403847&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85131403847&partnerID=8YFLogxK
U2 - 10.1126/sciadv.abn5626
DO - 10.1126/sciadv.abn5626
M3 - Article
C2 - 35658044
AN - SCOPUS:85131403847
SN - 2375-2548
VL - 8
JO - Science advances
JF - Science advances
IS - 22
M1 - eabn5626
ER -