生命科学研究科・分子化学生物学専攻

2023

222 nm far-UVC efficiently introduces nerve damage in Caenorhabditis elegans

Yoshiyama, K. O., Okamoto, N. L., Hidema, J. & Higashitani, A., 2023 1月, In: PLoS ONE. 18, 1 January, e0281162.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

2 被引用数 (Scopus)

A microbial consortium led by a novel Pseudomonas species enables degradation of carbon tetrachloride under aerobic conditions

Stari, L., Tusher, T. R., Inoue, C. & Chien, M. F., 2023 4月, In: Chemosphere. 319, 137988.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

2 被引用数 (Scopus)

Comparative Analysis of Muscle Atrophy During Spaceflight, Nutritional Deficiency and Disuse in the Nematode Caenorhabditis elegans

Kim, B. S., Alcantara, A. V., Moon, J. H., Higashitani, A., Higashitani, N., Etheridge, T., Szewczyk, N. J., Deane, C. S., Gaffney, C. J., Higashibata, A., Hashizume, T., Yoon, K. H. & Lee, J. I., 2023 8月, In: International Journal of Molecular Sciences. 24, 16, 12640.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Convergent and Scalable Synthesis of the ABCDE-Ring Fragment of Caribbean Ciguatoxin C-CTX-1

Sasaki, M., Seida, M. & Umehara, A., 2023 1月 6, In: Journal of Organic Chemistry. 88, 1, p. 403-418 16 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Differentially Expressed Genes Associated with Body Size Changes and Transposable Element Insertions between Caenorhabditis elegans and Its Sister Species, Caenorhabditis inopinata

Kawahara, K., Inada, T., Tanaka, R., Dayi, M., Makino, T., Maruyama, S., Kikuchi, T., Sugimoto, A. & Kawata, M., 2023 4月 6, In: Genome Biology and Evolution. 15, 4

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

DMAPO/Boc₂O-Mediated One-Pot Direct N-Acylation of Less Nucleophilic N-Heterocycles with Carboxylic Acids

Umehara, A., Shimizu, S. & Sasaki, M., 2023 3月 8, In: ChemCatChem. 15, 5, e202201596.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

2 被引用数 (Scopus)

Double mutation of claudin-1 and claudin-3 causes alopecia in infant mice

Suzuki, K., Yamaga, K., Tokumasu, R., Katsuno, T., Tanaka, H., Chiba, S., Yagi, T., Katayama, I., Tamura, A., Murota, H. & Tsukita, S., 2023 5月, In: Annals of the New York Academy of Sciences. 1523, 1, p. 51-61 11 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Effective use of legacy data in a genome-wide association studies improves the credibility of quantitative trait loci detection in rice

Suganami, M., Kojima, S., Wang, F., Yoshida, H., Miura, K., Morinaka, Y., Watanabe, M., Matsuda, T., Yamamoto, E. & Matsuoka, M., 2023 3月, In: Plant Physiology. 191, 3, p. 1561-1573 13 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Environmental pH signals the release of monosaccharides from cell wall in coral symbiotic alga

Ishii, Y., Ishii, H., Kuroha, T., Yokoyama, R., Deguchi, R., Nishitani, K., Minagawa, J., Kawata, M., Takahashi, S. & Maruyama, S., 2023 8月 18, In: eLife. 12

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Functional Characterization of 12 Dihydropyrimidinase Allelic Variants in Japanese Individuals for the Prediction of 5-Fluorouracil Treatment-Related Toxicity

Hishinuma, E., Narita, Y., Gutierrez Rico, E. M., Ueda, A., Obuchi, K., Tanaka, Y., Saito, S., Tadaka, S., Kinoshita, K., Maekawa, M., Mano, N., Nakayoshi, T., Oda, A., Hirasawa, N. & Hiratsuka, M., 2023 2月 1, In: Drug Metabolism and Disposition. 51, 2, p. 165-173 9 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Genomic adaptive potential to cold environments in the invasive red swamp crayfish

Sato, D. X., Matsuda, Y., Usio, N., Funayama, R., Nakayama, K. & Makino, T., 2023 8月 18, In: iScience. 26, 8, 107267.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

1 被引用数 (Scopus)

High ultraviolet-B sensitivity due to lower CPD photolyase activity is needed for biotic stress response to the rice blast fungus, Magnaporthe oryzae

Mmbando, G. S., Ando, S., Takahashi, H. & Hidema, J., 2023 6月, In: Photochemical and Photobiological Sciences. 22, 6, p. 1309-1321 13 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

1 被引用数 (Scopus)

Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria

Idola, D., Mori, H., Nagata, Y., Nonaka, L. & Yano, H., 2023 12月, In: Mobile DNA. 14, 1, 7.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Increased mitochondrial Ca²⁺ contributes to health decline with age and Duchene muscular dystrophy in C. elegans

Higashitani, A., Teranishi, M., Nakagawa, Y., Itoh, Y., Sudevan, S., Szewczyk, N. J., Kubota, Y., Abe, T. & Kobayashi, T., 2023 4月, In: FASEB Journal. 37, 4, e22851.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

L-2hydroxyglutaric acid rewires amino acid metabolism in colorectal cancer via the mTOR-ATF4 axis

Tabata, S., Kojima, Y., Sakamoto, T., Igarashi, K., Umetsu, K., Ishikawa, T., Hirayama, A., Kajino-Sakamoto, R., Sakamoto, N., Yasumoto, K. I., Okano, K., Suzuki, Y., Yachida, S., Aoki, M. & Soga, T., 2023 4月 13, In: Oncogene. 42, 16, p. 1294-1307 14 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

MLPK function is not required for self-incompatibility in the S ²⁹ haplotype of Brassica rapa L.

Ohata, M., Takada, Y., Sato, Y., Okamoto, T., Murase, K., Takayama, S., Suzuki, G. & Watanabe, M., 2023 9月, In: Plant Reproduction. 36, 3, p. 255-262 8 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Molecular characterization of SrSTP14, a sugar transporter from thermogenic skunk cabbage, and its possible role in developing pollen

Koyamatsu, D., Otsubo, M., Ohira, T., Sato, M. P., Suzuki-Masuko, H., Shiota, T., Takenaka Takano, K., Ozeki, M., Otsuka, K., Ogura, Y., Hayashi, T., Watanabe, M., Inaba, T. & Ito-Inaba, Y., 2023 7月 1, In: Physiologia Plantarum. 175, 4, e13957.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Multiple interactions of the dynein-2 complex with the IFT-B complex are required for effective intraflagellar transport

Hiyamizu, S., Qiu, H., Vuolo, L., Stevenson, N. L., Shak, C., Heesom, K. J., Hamada, Y., Tsurumi, Y., Chiba, S., Katoh, Y., Stephens, D. J. & Nakayama, K., 2023 3月, In: Journal of Cell Science. 136, 5, jcs260462.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

p62 Phase-Separation as the Foundation of Autophagy-Based Degraders

Takahashi, D. & Arimoto, H., 2023 2月 7, In: Biochemistry. 62, 3, p. 559-560 2 p.

研究成果: ジャーナルへの寄稿 › 簡易調査 › 査読

Penetration through Outer Membrane and Efflux Potential in Pseudomonas aeruginosa of Bulgecin A as an Adjuvant to β-Lactam Antibiotics

Kim, C., Tomoshige, S., Lee, M., Zgurskaya, H. I. & Mobashery, S., 2023 2月, In: Antibiotics. 12, 2, 358.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

1 被引用数 (Scopus)

Proteomic features of skeletal muscle adaptation to resistance exercise training as a function of age

Deane, C. S., Phillips, B. E., Willis, C. R. G., Wilkinson, D. J., Smith, K., Higashitani, N., Williams, J. P., Szewczyk, N. J., Atherton, P. J., Higashitani, A. & Etheridge, T., 2023 6月, In: GeroScience. 45, 3, p. 1271-1287 17 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

3 被引用数 (Scopus)

Quick and Spontaneous Transformation between [3Fe–4S] and [4Fe–4S] Iron–Sulfur Clusters in the tRNA-Thiolation Enzyme TtuA

Ishizaka, M., Chen, M., Narai, S., Tanaka, Y., Ose, T., Horitani, M. & Yao, M., 2023 1月, In: International Journal of Molecular Sciences. 24, 1, 833.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication

Bessho-Uehara, K., Masuda, K., Wang, D. R., Angeles-Shim, R. B., Obara, K., Nagai, K., Murase, R., Aoki, S. I., Furuta, T., Miura, K., Wu, J., Yamagata, Y., Yasui, H., Kantar, M. B., Yoshimura, A., Kamura, T., McCouch, S. R. & Ashikari, M., 2023 1月 24, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 4, e2207105120.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

1 被引用数 (Scopus)

RNA-seq analysis to identify genes related to resting egg production of panarctic Daphnia pulex

Maruoka, N., Makino, T. & Urabe, J., 2023 12月, In: BMC Genomics. 24, 1, 262.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

RPL3L-containing ribosomes determine translation elongation dynamics required for cardiac function

Shiraishi, C., Matsumoto, A., Ichihara, K., Yamamoto, T., Yokoyama, T., Mizoo, T., Hatano, A., Matsumoto, M., Tanaka, Y., Matsuura-Suzuki, E., Iwasaki, S., Matsushima, S., Tsutsui, H. & Nakayama, K. I., 2023 12月, In: Nature Communications. 14, 1, 2131.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Second-Generation AUTACs for Targeted Autophagic Degradation

Takahashi, D., Ora, T., Sasaki, S., Ishii, N., Tanaka, T., Matsuda, T., Ikeda, M., Moriyama, J., Cho, N., Nara, H., Maezaki, H., Kamaura, M., Shimokawa, K. & Arimoto, H., 2023, (受理済み/印刷中) In: Journal of Medicinal Chemistry.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Seed transmission of raspberry bushy dwarf virus is blocked in Nicotiana benthamiana plants by preventing virus entry into the embryo from the infected embryo sac and endosperm

Isogai, M., Yoshikoshi, M., Seki, K., Masuko-Suzuki, H., Watanabe, M., Matsuo, K. & Yaegashi, H., 2023 5月, In: Archives of Virology. 168, 5, 138.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants

Fuentes-Merlos, M. I., Bamba, M., Sato, S. & Higashitani, A., 2023 8月 1, In: DNA Research. 30, 4, dsad016.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Simple Method for the Creation of a Bacteria-Sized Unilamellar Liposome with Different Proteins Localized to the Respective Sides of the Membrane

Noba, K., Yoshimoto, S., Tanaka, Y., Yokoyama, T., Matsuura, T. & Hori, K., 2023 5月 19, In: ACS Synthetic Biology. 12, 5, p. 1437-1446 10 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Structural and molecular insight into antibody recognition of dynamic neoepitopes in membrane tethered MUC1 of pancreatic cancer cells and secreted exosomes

Wakui, H., Yokoi, Y., Horidome, C., Ose, T., Yao, M., Tanaka, Y., Hinou, H. & Nishimura, S. I., 2023 5月 24, In: RSC Chemical Biology. 4, 8, p. 564-572 9 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus

Murayama, Y., Ehara, H., Aoki, M., Goto, M., Yokoyama, T. & Sekine, S. I., 2023 2月, In: Science advances. 9, 6, eade7093.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Synthesis of epitope-targeting nanobody based on native protein–protein interactions for FtsZ filamentation suppressor

Nakazawa, H., Katsuki, T., Matsui, T., Tsugita, A., Yokoyama, T., Ito, T., Kawada, S., Tanaka, Y. & Umetsu, M., 2023, (受理済み/印刷中) In: Biotechnology Journal.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

The difference in the cellular uptake of tocopherol and tocotrienol is influenced by their affinities to albumin

Nakatomi, T., Itaya-Takahashi, M., Horikoshi, Y., Shimizu, N., Parida, I. S., Jutanom, M., Eitsuka, T., Tanaka, Y., Zingg, J. M., Matsura, T. & Nakagawa, K., 2023 12月, In: Scientific Reports. 13, 1, 7392.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Transcriptomic heterochrony and completely cleistogamous flower development in the mycoheterotrophic orchid Gastrodia

Suetsugu, K., Fukushima, K., Makino, T., Ikematsu, S., Sakamoto, T. & Kimura, S., 2023 1月, In: New Phytologist. 237, 1, p. 323-338 16 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

6 被引用数 (Scopus)

2022

Algorisms used for in silico finishing of bacterial genomes based on short-read assemblage implemented in GenoFinisher, AceFileViewer, and ShortReadManager

Ohtsubo, Y., Hirose, Y. & Nagata, Y., 2022 6月 1, In: Bioscience, Biotechnology and Biochemistry. 86, 6, p. 693-703 11 p.

研究成果: ジャーナルへの寄稿 › 総説 › 査読

A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation

Watari, H., Kageyama, H., Masubuchi, N., Nakajima, H., Onodera, K., Focia, P. J., Oshiro, T., Matsui, T., Kodera, Y., Ogawa, T., Yokoyama, T., Hirayama, M., Hori, K., Freymann, D. M., Imai, M., Komatsu, N., Araki, M., Tanaka, Y. & Sakai, R., 2022 12月, In: Nature Communications. 13, 1, 7262.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Amyloid conformation-dependent disaggregation in a reconstituted yeast prion system

Nakagawa, Y., Shen, H. C. H., Komi, Y., Sugiyama, S., Kurinomaru, T., Tomabechi, Y., Krayukhina, E., Okamoto, K., Yokoyama, T., Shirouzu, M., Uchiyama, S., Inaba, M., Niwa, T., Sako, Y., Taguchi, H. & Tanaka, M., 2022 3月, In: Nature Chemical Biology. 18, 3, p. 321-331 11 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

13 被引用数 (Scopus)

An ancestral function of strigolactones as symbiotic rhizosphere signals

Kodama, K., Rich, M. K., Yoda, A., Shimazaki, S., Xie, X., Akiyama, K., Mizuno, Y., Komatsu, A., Luo, Y., Suzuki, H., Kameoka, H., Libourel, C., Keller, J., Sakakibara, K., Nishiyama, T., Nakagawa, T., Mashiguchi, K., Uchida, K., Yoneyama, K., Tanaka, Y., & 5 othersYamaguchi, S., Shimamura, M., Delaux, P. M., Nomura, T. & Kyozuka, J., 2022 12月, In: Nature Communications. 13, 1, 3974.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

22 被引用数 (Scopus)

BODIPY Catalyzes Proximity-Dependent Histidine Labelling

Nakane, K., Niwa, T., Tsushima, M., Tomoshige, S., Taguchi, H., Nakamura, H., Ishikawa, M. & Sato, S., 2022 5月 6, In: ChemCatChem. 14, 9, e202200077.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

5 被引用数 (Scopus)

Chimeric mutants of staphylococcal hemolysin, which act as both one-component and two-component hemolysin, created by grafting the stem domain

Ghanem, N., Kanagami, N., Matsui, T., Takeda, K., Kaneko, J., Shiraishi, Y., Choe, C. A., Uchikubo-Kamo, T., Shirouzu, M., Hashimoto, T., Ogawa, T., Matsuura, T., Huang, P. S., Yokoyama, T. & Tanaka, Y., 2022 6月, In: FEBS Journal. 289, 12, p. 3505-3520 16 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

1 被引用数 (Scopus)

Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus (Asparagus kiusianus), a dioecious plant species

Shirasawa, K., Ueta, S., Murakami, K., Abdelrahman, M., Kanno, A. & Isobe, S., 2022 2月 1, In: DNA Research. 29, 1, dsac002.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

1 被引用数 (Scopus)

Co-expression network analysis of environmental canalization in the ascidian Ciona

Sato, A., Oba, G. M., Aubert-Kato, N., Yura, K. & Bishop, J., 2022 12月, In: BMC Ecology and Evolution. 22, 1, 53.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

Comparative Transcriptome Analysis of Grafted Tomato with Drought Tolerance

Fuentes-Merlos, M. I., Bamba, M., Sato, S. & Higashitani, A., 2022 8月, In: Plants. 11, 15, 1947.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

Open Access

3 被引用数 (Scopus)

Contributions of F-specific subunits to the F plasmid-encoded type IV secretion system and F pilus

Kishida, K., Bosserman, R. E., Harb, L., Khara, P., Song, L., Hu, B., Zeng, L. & Christie, P. J., 2022 5月, In: Molecular Microbiology. 117, 5, p. 1275-1290 16 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

2 被引用数 (Scopus)

Convergent Synthesis of the HIJKLMN-Ring Fragment of Caribbean Ciguatoxin C-CTX-1 by a Late-Stage Reductive Olefin Coupling Approach

Sasaki, M., Iwasaki, K., Arai, K., Hamada, N. & Umehara, A., 2022 5月, In: Bulletin of the Chemical Society of Japan. 95, 5, p. 819-824 6 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読

1 被引用数 (Scopus)

Conversion of a PROTAC Mutant Huntingtin Degrader into Small-Molecule Hydrophobic Tags Focusing on Drug-like Properties

Hirai, K., Yamashita, H., Tomoshige, S., Mishima, Y., Niwa, T., Ohgane, K., Ishii, M., Kanamitsu, K., Ikemi, Y., Nakagawa, S., Taguchi, H., Sato, S., Hashimoto, Y. & Ishikawa, M., 2022 3月 10, In: ACS Medicinal Chemistry Letters. 13, 3, p. 396-402 7 p.

研究成果: ジャーナルへの寄稿 › 学術論文 › 査読