TY - JOUR
T1 - Bayesian inference of metal oxide ultrathin film structure based on crystal truncation rod measurements
AU - Anada, Masato
AU - Nakanishi-Ohno, Yoshinori
AU - Okada, Masato
AU - Kimura, Tsuyoshi
AU - Wakabayashi, Yusuke
N1 - Funding Information:
This work was supported by a Grant-in-Aid for Scientific Research (Japan Society for the Promotion of Science KAKENHI, grant Nos. JP26105008 and JP26287080).
Publisher Copyright:
© Masato Anada et al. 2017.
PY - 2017/12
Y1 - 2017/12
N2 - Monte Carlo (MC)-based refinement software to analyze the atomic arrangements of perovskite oxide ultrathin films from the crystal truncation rod intensity is developed on the basis of Bayesian inference. The advantages of the MC approach are (i) it is applicable to multi-domain structures, (ii) it provides the posterior probability of structures through Bayes' theorem, which allows one to evaluate the uncertainty of estimated structural parameters, and (iii) one can involve any information provided by other experiments and theories. The simulated annealing procedure efficiently searches for the optimum model owing to its stochastic updates, regardless of the initial values, without being trapped by local optima. The performance of the software is examined with a five-unit-cell-thick LaAlO3 film fabricated on top of SrTiO3. The software successfully found the global optima from an initial model prepared by a small grid search calculation. The standard deviations of the atomic positions derived from a dataset taken at a second-generation synchrotron are ±0.02 Å for metal sites and ±0.03 Å for oxygen sites.Reverse Monte Carlo software to analyze the atomic arrangements of perovskite oxide ultrathin films from the crystal truncation rod intensity is developed on the basis of Bayesian inference.
AB - Monte Carlo (MC)-based refinement software to analyze the atomic arrangements of perovskite oxide ultrathin films from the crystal truncation rod intensity is developed on the basis of Bayesian inference. The advantages of the MC approach are (i) it is applicable to multi-domain structures, (ii) it provides the posterior probability of structures through Bayes' theorem, which allows one to evaluate the uncertainty of estimated structural parameters, and (iii) one can involve any information provided by other experiments and theories. The simulated annealing procedure efficiently searches for the optimum model owing to its stochastic updates, regardless of the initial values, without being trapped by local optima. The performance of the software is examined with a five-unit-cell-thick LaAlO3 film fabricated on top of SrTiO3. The software successfully found the global optima from an initial model prepared by a small grid search calculation. The standard deviations of the atomic positions derived from a dataset taken at a second-generation synchrotron are ±0.02 Å for metal sites and ±0.03 Å for oxygen sites.Reverse Monte Carlo software to analyze the atomic arrangements of perovskite oxide ultrathin films from the crystal truncation rod intensity is developed on the basis of Bayesian inference.
KW - Bayesian inference
KW - Monte Carlo
KW - crystal truncation rods
KW - perovskite films
UR - http://www.scopus.com/inward/record.url?scp=85037132919&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85037132919&partnerID=8YFLogxK
U2 - 10.1107/S1600576717013292
DO - 10.1107/S1600576717013292
M3 - Article
AN - SCOPUS:85037132919
SN - 0021-8898
VL - 50
SP - 1611
EP - 1616
JO - Journal of Applied Crystallography
JF - Journal of Applied Crystallography
IS - 6
ER -